PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11573_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 267aa    MW: 30058.4 Da    PI: 9.7353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11573_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161461148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                         +g+WT +Ed++l +++k +G g W+  +++ g++R++k+c++rw++yl
  cra_locus_11573_iso_2_len_898_ver_3 14 KGAWTSQEDKILTEYIKVHGEGKWRNLPKKAGLKRCGKSCRLRWLNYL 61
                                         79********************************************97 PP

2Myb_DNA-binding50.54.7e-1667110146
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                          rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  cra_locus_11573_iso_2_len_898_ver_3  67 RGNITNDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                                          7999******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.53961IPR017930Myb domain
SuperFamilySSF466891.54E-2812108IPR009057Homeodomain-like
SMARTSM007177.5E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-141461IPR001005SANT/Myb domain
CDDcd001674.69E-91661No hitNo description
PROSITE profilePS5129423.87162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2365116IPR009057Homeodomain-like
SMARTSM007175.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467110IPR001005SANT/Myb domain
CDDcd001672.06E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRSPCCVKE GLNKGAWTSQ EDKILTEYIK VHGEGKWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TNDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKRLLEGH  120
HHHPSSSTTG SKPSSSIKSS RAKKNLSKKG SSCVVRTKAT RCTKVFIDAE LEQTQKPGIM  180
ATKEDGIIEK TGLETEAVAM AMAAAKVSKD NSSNFLMDIE MDDKFLYEFF RGEFITSCDL  240
KTRQDSELGS VASLLDPSDL NWLLQDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024611.19e-95Duplicated homeodomain-like superfamily protein, putative
SwissprotQ9FJA24e-65TT2_ARATH; Transcription factor TT2
TrEMBLA0A061GCW51e-94A0A061GCW5_THECC; Duplicated homeodomain-like superfamily protein, putative
TrEMBLA5AXZ49e-95A5AXZ4_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g01400.t013e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154